Methods and Compositions for the Treatment of Sterile Inflammation

ABSTRACT

Described are methods and compositions that inhibit IL-1 signalling for the treatment of acute inflammatory response to cell necrosis, and the attendant collateral tissue damage.

CLAIM OF PRIORITY

This divisional application claims the benefit of U.S. patentapplication Ser. No. 11/937,949, filed Nov. 9, 2007, which claims thebenefit of U.S. Patent Application Ser. No. 60/858,001, filed on Nov. 9,2006, the entire contents of which are hereby incorporated by reference.

FEDERALLY SPONSORED RESEARCH OR DEVELOPMENT

This invention was made with Government support under Grant No. PO1AI-057784-03 awarded by the National Institutes of Health. TheGovernment has certain rights in the invention.

TECHNICAL FIELD

This invention relates to methods of treating sterile inflammation.

BACKGROUND

In vivo, necrotic cell death almost inevitably provokes an inflammatoryresponse (Majno et al., “Cellular death and necrosis: chemical, physicaland morphologic changes in rat liver,” Virchows Arch. Pathol. Anat.Physiol. Klin. Med., 333:421-465, 1960). Within minutes, there is aninflux of neutrophils and at later times monocytes into injured tissues.This response is elicited by most types of injured cells and is sostereotypical that it is used to help identify cell death in vivo andeven estimate the time at which it occurred, e.g., after an ischemicinsult such as a myocardial infarction (Antman, Acute myocardialinfarction. In Heart Disease: A Textbook of Cardiovascular Medicine, 6thed. B. E., Z. D. P., and L. P., editors. Philadelphia, Pa.: W BSaunders. 1114-1231, 2001). This sterile inflammatory response toinjured cells is medically important. Acutely, it can cause pain,dysfunction and further tissue damage that may actually do more harmthan good, in at least some settings. Chronically, the sterileinflammation provoked by ongoing tissue damage is thought to contributeto the pathogenesis of many diseases, including ischemia-inducedinjuries (Fisher and Meiselmann, “Polymorphonuclear leukocytes inischemic vascular disease,” Thromb. Res., 74 Suppl. 1:S21-34, 1994),rheumatoid arthritis (Wipke and Allen, “Essential role of neutrophils inthe initiation and progression of a murine model of rheumatoidarthritis,” J. Immunol. 167:1601-1608, 2001; Chen et al.,“Neutrophil-derived leukotriene B4 is required for inflammatoryarthritis,” J. Exp. Med. 203:837-842, 2006; Kim et al., “A uniquerequirement for the leukotriene B4 receptor BLT1 for neutrophilrecruitment in inflammatory arthritis,” J. Exp. Med., 203:829-835,2006), acute lung injury (Abraham, “Neutrophils and acute lung injury,”Crit. Care Med. 31:S195-199, 2003), drug-induced liver injury (Liu etal., “Neutrophil depletion protects against murine acetaminophenhepatotoxicity,” Hepatology 43:1220-1230, 2006), inflammatory boweldiseases (Zingarelli et al., “Blockade of Poly(ADP-ribose) synthetaseinhibits neutrophil recruitment, oxidant generation, and mucosal injuryin murine colitis,” Gastroenterology, 116:335-345, 1999). It istherefore important to elucidate the mechanisms underlying the sterileinflammatory response to injured cells. Ultimately, these mechanismsmight be important targets of pharmacological intervention.

The inflammatory response to dying tissues is thought to serve severalfunctions. Cell death may help to alert the immune system to potentialdanger such as an infection. The ensuing inflammatory response rapidlymobilizes leukocytes that attempt to contain and/or eliminate aninfection, if present. Even if an infection isn't present, the recruitedleukocytes play an important role in removing the dead cells andstimulating tissue repair mechanisms (Serhan and Savill, “Resolution ofinflammation: the beginning programs the end,” Nat. Immunol.,6:1191-1197, 2005; Fadok et al., “Macrophages that have ingestedapoptotic cells in vitro inhibit proinflammatory cytokine productionthrough autocrine/paracrine mechanisms involving TGF-beta, PGE2, andPAF,” J. Clin. Invest., 101:890-898, 1998; Huynh et al.,“Phosphatidylserine-dependent ingestion of apoptotic cells promotesTGF-betal secretion and the resolution of inflammation,” J. Clin.Invest., 109:41-50, 2002). While these aspects of the inflammatoryresponse are beneficial, the recruited leukocytes can also damagehealthy cells. In the absence of infection, this “sterile inflammation”may cause dysfunction and disease (Sadasivan et al., “Neutrophilmediated microvascular injury in acute, experimental compartmentsyndrome,” Clin. Orthop. Relat. Res., 206-215, 1997; Bless et al.,“Protective effects of an aptamer inhibitor of neutrophil elastase inlung inflammatory injury,” Curr. Biol. 7:877-880, 1997; Sawa et al.,“Leukocyte depletion attenuates reperfusion injury in patients with leftventricular hypertrophy,” Circulation, 93:1640-1646, 1996; Sekido etal., “Prevention of lung reperfusion injury in rabbits by a monoclonalantibody against interleukin-8,” Nature, 365:654-657, 1993; Jaeschke,“Mechanisms of Liver Injury. II. Mechanisms of neutrophil-induced livercell injury during hepatic ischemia-reperfusion and other acuteinflammatory conditions,” Am. J. Physiol. Gastrointest. Liver Physiol.,290:G1083-1088, 2006). It is therefore important to understand the basisof the sterile inflammatory response to tissue injury.

SUMMARY

To stimulate an inflammatory response, dying cells must express orrelease proinflammatory molecules. The identity of these factors and howthey are sensed is poorly understood.

In infections and autoimmunity, triggers of inflammation stimulate theelaboration of proinflammatory mediators that actually initiate andamplify the inflammatory response. This same mechanism presumablyoperates in sterile inflammatory responses. Complement activation wassuggested to be a mechanism for the pathogenesis of necrotictissue-induced inflammation (Li et al., “An essential role of theNF-kappa B/Toll-like receptor pathway in induction of inflammatory andtissue-repair gene expression by necrotic cells,” J. Immunol.,166:7128-7135, 2001). However, the major downstream mediators that drivethe inflammatory response to tissue injury have not been clearlydefined.

The present invention is based, at least in part, on the discovery thatIL-1R expression and its signaling through Myeloid DifferentiationPrimary Response Gene 88 (MyD88) on parenchymal cells play pivotal rolesin mediating the sterile inflammatory response. The results describedherein demonstrate that this is a major pathway that is essential forthe neutrophil response to tissue injury, and is therefore a suitabletarget for therapeutic and prophylactic intervention. While IL-1 wasgenerally suspected to be one of many mediators generated in settings ofinflammation, the key and dominant role of this cytokine in driving thesterile inflammatory response to dying cells was not known. Thus it wasnot previously known what mediators were the essential targets tocontrol therapeutically and it was not practical to attempt to targetsimultaneously all of the mediators produced. The discovery describedherein is of the central role that this one cytokine, IL-1, plays ingenerating the sterile inflammatory response, and that blocking theactions of IL-1 is effective in blocking sterile inflammation to celldeath and its attendant tissue damage.

Thus, the methods include blocking IL-1 production, IL-1 itself, IL-1Rand/or the IL-1R signaling pathway to reduce the acute inflammatoryresponse to cell injury and death, and the attendant collateral tissuedamage. The methods can be used in conditions associated with cellnecrosis that provokes sterile inflammation. Such conditions can includetrauma and wounds (including surgical wounds); acute respiratorydistress syndrome (diffuse alveolar damage) and other lung diseases withnecrosis-associated inflammation; asthma; necrotic glomerulonephritis;necrotic vasculitis; necrotic pancreatitis; inflammatory bowel disease;necrotic damage from toxic agents or drugs; and necrotic hepatitis. Insome embodiments, the condition is associated with an ischemic injuryresulting in necrosis.

In a first aspect, the invention provides methods for treating,preventing, or delaying development or progression of a conditionassociated with sterile inflammation caused by necrosis in a subject.The methods include administering to the subject a therapeuticallyeffective amount of a compound that inhibits IL-1 signalling. In someembodiments, the methods include detecting the presence of necroticcells or tissues in a subject who has, or is at risk of having, acondition associated with sterile inflammation; and selecting thesubject if necrotic cells are present.

Compounds that inhibit IL-1 signalling are described herein, e.g.,inhibitors of IL-1 production; inhibitory nucleic acids that decreaseexpression of IL-1 pathway molecules (e.g., IL-1, IL-1R, MyD88, TRAF6,TAK1, NIK/MKK, IKK, NF-kappaB, or caspase); naturally occurringinhibitors of IL-1 signalling, e.g., IL-1 receptor antagonist (IL-1 RA)and IL-1 receptor type II (IL-1 R type II); and ICE/caspase inhibitors.

In some embodiments, the condition associated with sterile inflammationcaused by necrosis is sterile inflammation associated with pancreatitis.

In some embodiments, the condition associated with sterile inflammationcaused by necrosis is sterile inflammation associated with ischemicinjury, e.g., an injury to cardiac tissue, uterine tissue, renal tissue,hepatic tissue, neural tissue, muscle tissue, dermal tissue, or otherorgan. The ischemic injury can be caused by, e.g., a surgicalintervention, e.g., an organ transplantation procedure; for example, thenecrosis can be in a transplanted organ.

In some embodiments, administration of the inhibitor is by localadministration to the necrotic cells or a tissue or organ comprising thenecrotic cells.

In a further aspect, the invention includes methods for identifyingcandidate compounds useful in the treatment, prevention, or delay ofdevelopment or progression of a condition associated with sterileinflammation. The methods include providing a sample comprising one ormore of MyD88, IL-1, or IL-1 receptor; contacting the sample with one ormore test compounds; and detecting binding of a test compound to theMyD88, IL-1, or IL-1 receptor in the sample. A test compound that bindsto the MyD88, IL-1, or IL-1 receptor in the sample is a candidatecompound useful in the treatment, prevention, or delay of development orprogression of a condition associated with sterile inflammation.

In some embodiments, the methods also include selecting a test compoundthat binds to the MyD88, IL-1, or IL-1 receptor; providing a cellcomprising functional MyD88, IL-1 and IL-1 receptor; contacting the cellwith the test compound; assaying an effect of the test compound on theMyD88/IL-1 signalling in the cell. A test compound that inhibitsMyD88/IL-1 signalling in the cell is a candidate compound useful in thetreatment, prevention, or delay of development or progression of acondition associated with sterile inflammation.

Unless otherwise defined, all technical and scientific terms used hereinhave the same meaning as commonly understood by one of ordinary skill inthe art to which this invention belongs. Methods and materials aredescribed herein for use in the present invention; other, suitablemethods and materials known in the art can also be used. The materials,methods, and examples are illustrative only and not intended to belimiting. All publications, patent applications, patents, sequences,database entries, and other references mentioned herein are incorporatedby reference in their entirety. In case of conflict, the presentspecification, including definitions, will control.

Other features and advantages of the invention will be apparent from thefollowing detailed description and figures, and from the claims.

DESCRIPTION OF DRAWINGS

FIG. 1A is a representative dot plot of FACS analysis of Ly-6G and 7/4expression on peritoneal exudate cells (PECs) in C57BL/6 mice injected16 hours earlier with PBS or necrotic EL4 cells.

FIGS. 1B-1F are bar graphs illustrating neutrophil numbers determined bymultiplying the total cell numbers with the percentage of Ly-6G⁺,7/4⁺cells (n=3) in C57BL/6 mice as compared to mice deficient for MyD88(1B), B6129 mice as compared to mice deficient for TRAM (1C), B6129 miceas compared to mice deficient for Mal (1D), or B6129 mice as compared tomice deficient for TRIF (1E) after challenge i.p. with necrotic EL4cells as described herein. At 16 hours after challenge, PEC were stainedfor Ly-6G and 7/4 expression and analyzed by flow cytometry.

FIG. 1F is a bar graph showing neutrophil numbers in C57BL/6 orMyD88^(−/−) mice challenged with 0.5 mg zymosan; PEC were analyzed forneutrophil numbers at 4 hours. Means and standard errors in FIGS. 1B-Fare combined data from two or more independent experiments, and n'sreported are the number of animals combining multiple experiments foreach group. **, P<0.01 versus controls (C57BL/6 in 1B; B6129 in 1C-E).

FIGS. 2A-J are bar graphs illustrating neutrophil numbers in C57BL/6mice and mice deficient for (2A) Toll-like receptor 1 (TLR1), (2B) TLR2,(2C) TLR3, (2D) TLR4, (2E) TLR6, (2F) TLR7, (2G) TLR9, (2H) TLR11, or(2I) TLR2/4, 16 hours after i.p. challenge with necrotic EL4 cells.C57BL/6 mice challenged with PBS served as negative controls. Means andstandard errors shown are combined data from two or more independentexperiments, and n's reported are the number of animals combiningmultiple experiments for each group. *, P<0.05 versus control (C57BL/6).

FIGS. 3A-B are bar graphs illustrating neutrophil numbers in C57BL/6mice and mice deficient for (3A) IL-1R or (3B) IL-18R challenged i.p.with necrotic EL4 cells as described in the METHODS. C57BL/6 micechallenged with PBS served as negative controls. At 16 hours afterchallenge, neutrophil numbers in the PEC were determined (n=3 in 3A, andn=4 in 3B). Data shown are representative of three independentexperiments. **, P<0.01 versus control (C57BL/6).

FIGS. 4A-B are bar graphs illustrating neutrophil numbers 16 hours afteri.p. challenge with necrotic EL4 cells (in PBS) in bone marrow chimerasgenerated as described herein. 4A, C57BL/6 (WT) mice served as hosts,and B6.SJL (WT) or IL-1R^(−/−) mice served as bone marrow donors. 4B,C57BL/6 (WT) and IL-1R^(−/−) mice served as hosts, and B6.SJL (WT) miceserved as bone marrow donors. C57BL/6 mice challenged with PBS served asnegative controls. Data shown are representative of four independentexperiments. **, P<0.01 versus control (WT→WT).

FIG. 5A is a representative dot plot of Ly-6G and 7/4 expression on PECin C57BL/6 mice injected 16 hours earlier with PBS or necrotic B16cells.

FIGS. 5B-C are bar graphs illustrating neutrophil numbers in C57BL/6mice and mice deficient for MyD88 (5B) or IL-1R (5C), 16 hours afteri.p. challenge with necrotic B16 cells as described herein. C57BL/6 micechallenged with PBS served as negative controls. (n=3 in B; n=4 forC57BL/6 and n=2 for IL-1^(−/−) in C). *, P<0.05; **, P<0.01 versuscontrol (C57BL/6).

FIG. 6A is a representative dot plot of Ly-6G and 7/4 expression on PECin C57BL/6 mice injected 16 hours earlier with PBS or liver homogenate.

FIGS. 6B-C are bar graphs illustrating neutrophil numbers in C57BL/6mice and mice deficient for MyD88 (6B) or IL-1R (6C) 16 hours after i.p.challenge with liver homogenate as described in the METHODS. C57BL/6mice challenged with PBS served as negative controls. (n=4 in B and n=5in C). **, P<0.01 versus control (C57BL/6).

FIGS. 7A-B are bar graphs illustrating monocyte numbers in C57BL/6 miceand mice deficient for MyD88 (7A) or IL-1R (7B), 16 hours after i.p.challenge with necrotic EL4, B16, or liver homogenate as indicated.Monocyte numbers in the PEC were determined by multiplying the totalcell numbers with the percentage of Ly-6G⁻, 7/4⁺ cells. Means andstandard errors shown are combined data from two or more independentexperiments, and n's reported are the number of animals combiningmultiple experiments for each group. **, P<0.01 versus control(C57BL/6).

FIGS. 8A-B are bar graphs illustrating serum ALT activities (8A) andliver tissue myeloperoxidase activity (8B) in C57BL/6 mice and micedeficient for IL-1R 18 hours after challenge with 300 mg/kgacetaminophen as described herein. C57BL/6 mice challenged with PBSserved as negative controls (n=6). Data shown are representative ofthree experiments. *, P<0.05; **, P<0.01 versus control (C57BL/6).

FIGS. 9A-B are bar graphs illustrating neutrophil and monocyte numbersin Hmgb1^(+/+) and Hmgb1^(−/−) cells that were UV-irradiated andinjected i.p. into C57BL/6 mice as described herein. C57BL/6 micechallenged with PBS served as negative controls. At 16 hours afterchallenge, neutrophil (9A) and monocyte (9B) numbers in the PEC weredetermined. Means and standard errors shown are combined data from twoindependent experiments, and n's reported are the number of animalscombining two experiments for each group.

FIG. 9C is a bar graph illustrating neutrophil numbers in C57BL/6 andMyD88^(−/−) mice were challenged i.p. with necrotic Hmgb1^(+/+) orHmgb1^(−/−) cells. At 16 hours after challenge, neutrophil numbers inthe PEC were determined (n=4). Data shown are representative of threeexperiments. *, P<0.05; **, P<0.01 versus control (C57BL/6).

DETAILED DESCRIPTION

As noted above, necrotic cell death almost inevitably provokes aninflammatory response, referred to as “sterile inflammation” in theabsence of infection. Once dead cells are sensed, the subsequentdownstream pathways that stimulate sterile inflammation are poorlyunderstood. As described herein, the Toll/IL-1 receptor (TIR) adaptorprotein MyD88 plays a major role in the acute inflammatory response todead cells. Since the reduction in inflammation was profound inMyD88-deficient mice but not in TLR-deficient mice, the other knownMyD88-dependent receptors, IL-1R and IL18R, were also studied.IL-1R-deficient mice showed a similar reduction in inflammation asMyD88-negative mice while the response of IL-18R mutant mice was normal.Therefore, IL-1R signaling is a central mediator in the sterileinflammatory response.

Blocking sterile inflammation is an attractive strategy to limit thedamage of acute inflammation and to stop the ongoing damage in chronicinflammation to tissue injury. Therefore, as described herein, agentsthat block IL-1 are expected to be useful in limiting tissue damageduring sterile inflammation. In support of this concept, hepatocytedamage (assayed by ALT release) induced by a toxic insult(acetaminophen) is reduced in IL-1R-deficient mice, as shown herein.

Therapeutic and Prophylactic Interventions

The methods described herein include methods for treating and preventingthe progression or onset of tissue damage associated with sterileinflammation in response to cell death. Sterile inflammation, as usedherein, is a condition where neutrophils and other leukocytes infiltrateinto the extracellular space of tissues n the absence of any infection.Thus, the methods described herein can be used to treat subjects whohave sterile inflammation associated with cell necrosis, or to preventthe development of sterile inflammation in subjects who have cellnecrosis and who have or are at high risk of developing sterileinflammation, e.g., subjects who have had an ischemic injury or othersterile trauma.

Thus, the methods described herein can include detecting the presence ofcell necrosis in a subject, i.e., in a tissue of the subject, andselecting a subject on the basis that they have cell necrosis, andadministering to the subject an effective amount of a compositiondescribed herein, e.g., a composition that inhibits IL-1 signalling, asdefined herein.

A potential problem with potently blocking the inflammatory response isthat this can decrease the ability of the host to prevent or containinfections and might interfere with tissue repair. In this context, itis interesting that MyD88-deficient animals still mount an acuteinflammatory response, particularly neutrophil recruitment, to amicrobial stimulus, zymosan. This finding indicates that IL-1 pathwayblockade might have less of an effect on inflammation to microbes thanon sterile inflammation.

Moreover, although MyD88 and IL-1R-deficient animals show a markedreduction in the neutrophil response, the recruitment of monocytes wasnot affected or even much diminished. Thus, blocking the IL-1 pathwaytherapeutically is expected to limit the damaging effects of neutrophilswhile retaining host defense and tissue repair functions of monocytes.This indicates that IL-1 pathway blockade is expected to havetherapeutic benefit in sterile inflammation without markedly increasingsusceptibility to infection or compromising healing.

Thus, the invention also includes methods for the administration and useof therapeutic compounds described herein in the treatment, prevention,or delay of development or progression of a condition associated withsterile inflammation caused by cell necrosis.

Detection of Cell Necrosis

A number of methods are known in the art for detecting cell necrosis.For example, a biopsy sample can be taken of the tissue suspected ofincluding necrotic cells, and necrosis can be detected in the sampleusing standard methods, e.g., using detection of biochemical markers ofnecrosis, immunohistochemical markers of necrosis, or morphologicalmarkers of necrosis. The intact membrane of living cells excludescationic dyes, such as propidium iodide (PI), 7-Amino-actinomycin D(7-AAD), or trypan blue. Due to the extensive membrane damage associatedwith necrosis, necrotic cells can be stained by short incubations withthese agents, e.g., PI. Apoptotic cells (with the exception of cells inthe late stages of apoptosis, which behave more like necrotic cells inthese assays) show an uptake of PI that is much lower than that ofnecrotic cells. Thus, PI stainting can be used distinguish healthy cells(PI negative), apoptotic cells (PI dim) and necrotic (PI bright) cellsfrom each other. Thus, methods that detect uptake of molecules such aspropidium iodide (PI, e.g., Calbiochem, CA) or 7-Amino-actinomycin D(7-AAD, e.g.eeee, Calbiochem, CA), which indicate the loss of plasmamembrane integrity associated with necrosis, can be used.

Flow cytometry is one useful way to detect necrotic cells. For example,a flow cytometer with forward (FSC) and side) (90° scatter (SSC)detection can be used. A cell passing through the laser beam in a flowcytometer generates light scatter, and FSC provides information aboutcell size, while SSC provides information about the morphologicalcomplexity. Cell death is associated with changes in both morphology andsize, which change light scatter in flow cytometry. In particular, whena cell dies by necrosis, both FSC and SSC tend to increase, probably asa consequence of cell swelling. Then FSC and SSC rapidly decrease,probably as a consequence of plasma membrane damage and leakage of cellconstituents.

Alternatively, methods that detect necrosis in vivo can be used. Forexample, methods are known in the art for using magnetic resonanceimaging (MRI) (see, e.g., Gabriel et al., “MRI detection of uterinenecrosis after uterine artery embolization for fibroids,” Am. J.Roentgenology 183(3):733-736, 2004); Positano et al., “A fast andeffective method to assess myocardial necrosis by means of contrastmagnetic resonance imaging,” J. Cardiovasc. Magn. Reson. 7(2):487-94,2005) or myocardial scintigraphy (Willerson, “Technetium 99 m stannouspyrophosphate myocardial scintigraphy to detect myocardial necrosis,”West. J. Med., 127(6):510-512, 1977) to detect necrosis.

Inhibitors of IL-1 Signalling

As used herein, inhibitors of IL-1 signalling act directly on moleculesof the IL-1 signalling pathway: IL-1, IL-1R, MyD88, TRAF6, TAK1,NIK/MKK, IKK, NF-kappaB, or caspase. Interleukin-1 (IL-1) is aproinflammatory cytokine which has been implicated in the inflammatoryresponse occurring in the brain, spinal cord, retina, muscle, andelsewhere in the body; inhibitors useful in the present invention reducethe biologic effect of IL-1. In some embodiments, the inhibitor of IL-1signalling acts directly on IL-1 or the IL-1R, i.e., binds to IL-1 orIL-1R proteins or nucleic acids encoding IL-1 or IL-R.

Inhibitors of IL-1 signalling can take several forms. For examples,inhibitors of IL-1 signalling can be cytokine neutralizing agents. Theymay be antibodies, e.g., monoclonal antibodies or antigen bindingfragments. They may take the form of a soluble receptor to IL-1, e.g.,as described in Beck et al., “Generation of soluble interleukin-1receptor from an immunoadhesin by specific cleavage,” Mol. Immunol.31(17):1335-44, 1994). Soluble receptors freely circulate in the body.When they encounter their target cytokine (i.e., IL-1) they bind to it,effectively inactivating the cytokine, since the cytokine is then nolonger able to bind with its biologic target in the body. An even morepotent antagonist consists of two soluble receptors fused together,e.g., to a specific portion of an immunoglobulin molecule (Fc fragment).This produces a dimer composed of two soluble receptors which have ahigh affinity for the target, and a prolonged half-life.

There are two naturally occurring inhibitors of IL-1 signalling: IL-1receptor antagonist (IL-1 RA) and IL-1 receptor type II (IL-1 R typeII); see, e.g., Symons et al., “Purification and characterization of anovel soluble receptor for interleukin 1,” J. Exp. Med., 174(5):1251-4,1991); and Symons et al., “Soluble type II interleukin 1 (IL-1) receptorbinds and blocks processing of IL-1 beta precursor and loses affinityfor IL-1 receptor antagonist,” Proc. Natl. Acad. Sci. U. S. A.,92(5):1714-8, 1995). IL-1RA is approved in the U.S. for the treatment ofrheumatoid arthritis, under the trade name ANKINRA. Soluble IL-1R II isalso in clinical trials for the treatment of RA, and has demonstratedefficacy pre-clinically (Dawson et al., “Effects of solubleinterleukin-1 type II receptor on rabbit antigen-induced arthritis:clinical, biochemical and histological assessment,” Rheumatology38(5):401-406, 1999). Additional inhibitors of IL-1 signalling includerecombinant soluble IL-1 receptors, and fusion proteins consisting oftwo IL-1 receptors attached to the Fc portion of a human IgG molecule(e.g., IL-1 trap, also known as RGN-303, is in clinical trials for RA);and monoclonal antibodies with a high affinity for IL-1 or IL-1R.Monoclonal antibodies with a high affinity for IL-1 will tend to reducethe biologic activity of IL-1; a number of potent IL-1R antagonistantibodies are known in the art, e.g., as described in Fredericks etal., “Identification of potent human anti-IL-1RI antagonist antibodies,”Protein Eng. Des. Sel. 17(1):95-106, 2004). For additional inhibitors,see, e.g., U.S. Pat. No. 6,471,961 to Tobinick. Antibody based IL-1blockers, such as anti-IL1a or anti-IL1b monoclonal antibodies can begenerated using the human IL-1a protein sequence (accession no.CAG33695) or the human IL-1b protein sequence (accession no. CAG28607)using techniques known in the art.

In addition, IL-1 signalling inhibitors include inhibitory nucleic acidsthat decrease expression of IL-1 pathway molecules. Such inhibitorynucleic acids include antisense, small interfering RNAs, aptamers,ribozymes, and peptide-nucleic acids (PNAs) directed against a pathwaymolecule. For example, MyD88 antisense oligonucleotides are known in theart, see, e.g., U.S. Pat. No. 7,033,830 to Karras et al., and Vickers etal., “Modification of MyD88 mRNA splicing and inhibition of IL-1betasignaling in cell culture and in mice with a 2′-O-methoxyethyl-modifiedoligonucleotide,” J. Immunol. 176(6):3652-61, 2006). IL-1 antisenseoligonucleotides are known in the art, see, e.g., Watson et al., “TheIL-1β-converting enzyme (caspase-1) inhibits apoptosis of inflammatoryneutrophils through activation of IL-1β,” J. Immunol., 161:957-62,1998). IL-1R antisense oligonucleotides are known in the art, see, e.g.,U.S. Pat. No. 5,856,099; and Burch and Mahan, “Oligonucleotidesantisense to the interleukin 1 receptor mRNA block the effects ofinterleukin 1 in cultured murine and human fibroblasts and in mice,” J.Clin. Invest. 88(4):1190-1196 (1991). Methods for identifying and usingsuch inhibitory nucleic acids are well known, e.g., “gene walk” methods,and can be performed using, e.g., the human IL-1α sequence (accessionno. BC013142) or the human IL-1β sequence (accession number BC008678).See, e.g., U.S. Pre-Grant Pub. No. 20060276458.

Furthermore, inhibitors of IL-1 signalling as used herein includesinhibitors of IL-1 production. For example, IL-1 is expressed as anon-functional pro molecule; cleavage by caspase produces the activeform. Thus, IL-1 inhibitors include ICE/caspase inhibitors, a number ofwhich are known in the art; see, e.g., Valentino et al., “First clinicaltrial of a novel caspase inhibitor: anti-apoptotic caspase inhibitor,IDN-6556, improves liver enzymes,” Int. J. Clin. Pharmacol. Ther.41(10):441-9, 2003) (describing IDN-6556, from Idun Pharmaceuticals, ananti-apoptotic agent); VX-740 (PRALNACASAN) and VX-765 asanti-inflammatory agents (Vertex Pharmaceuticals); and z-VAD (R&DSystems). Pfizer has discovered three new classes of small moleculecompounds that affect production, processing, or release of IL-1β,including cytokine-release inhibitory drugs (CRID), includingdiarylsulfonyl ureas such as CP-424174 and C-412245; IL-1β productioninhibitors including pyridine-2 carboxylates such as CJ-14877 andCJ-14897; and a fungus-derived compound that also inhibits production ofIL-1, LL-Z1271α. See, e.g., Randle et al., “ICE/Caspase-1 inhibitors asnovel anti-inflammatory drugs,” Exp. Op. Inv. Drugs, 10(7):1207-1209,2001), and Braddock and Quinn, Nat. Rev. 3:1-10 (2004).

Screening Methods and Test Compounds

The invention includes methods for screening of test compounds, toidentify compounds that inhibit IL-1 signalling, for use in a method oftreatment or prophylaxis of sterile inflammation associated with cellnecrosis as described herein. In some embodiments, the methods includefirst identifying test compounds that are capable of binding to IL-1 ora molecule in the IL-1 signalling pathway, and evaluating those testcompounds that bind for the ability to inhibit IL-1 signalling activity.Such compounds can be useful in the prophylactic and therapeutic methodsdescribed herein.

Test Compounds

As used herein, a “test compound” can be any chemical compound, forexample, a macromolecule (e.g., a polypeptide, a protein complex,glycoprotein, or a nucleic acid) or a small molecule (e.g., an aminoacid, a nucleotide, an organic or inorganic compound, e.g., with amolecular weight of less than 1,000 Da), oligopeptides,oligonucleotides, or carbohydrates.

In some embodiments, the test compounds are initially members of alibrary, e.g., an inorganic or organic chemical library, peptidelibrary, oligonucleotide library, or mixed-molecule library. In someembodiments, the methods include screening small molecules, e.g.,natural products or members of a combinatorial chemistry library.

A given library can comprise a set of structurally related or unrelatedtest compounds. Preferably, a set of diverse molecules should be used tocover a variety of functions such as charge, aromaticity, hydrogenbonding, flexibility, size, length of side chain, hydrophobicity, andrigidity. Combinatorial techniques suitable for creating libraries areknown in the art, e.g., methods for synthesizing libraries of smallmolecules, e.g., as exemplified by Obrecht and Villalgordo,Solid-Supported Combinatorial and Parallel Synthesis ofSmall-Molecular-Weight Compound Libraries, Pergamon-Elsevier ScienceLimited (1998). Such methods include the “split and pool” or “parallel”synthesis techniques, solid-phase and solution-phase techniques, andencoding techniques (see, for example, Czarnik, “Encoding methods forcombinatorial chemistry,” Curr. Opin. Chem. Bio. 1:60-6, 1997). Inaddition, a number of libraries, including small molecule libraries, arecommercially available.

In some embodiments, the test compounds are peptide or peptidomimeticmolecules, e.g., peptide analogs including peptides comprisingnon-naturally occurring amino acids or having non-peptide linkages;peptidomimetics (e.g., peptoid oligomers, e.g., peptoid amide or esteranalogues, beta-peptides, D-peptides, L-peptides, oligourea oroligocarbamate); small peptides (e.g., pentapeptides, hexapeptides,heptapeptides, octapeptides, nonapeptides, decapeptides, or larger,e.g., 20-mers or more); cyclic peptides; other non-natural or unnaturalpeptide-like structures; and inorganic molecules (e.g., heterocyclicring molecules). In some embodiments, the test compounds are nucleicacids, e.g., DNA or RNA oligonucleotides.

In some embodiments, test compounds and libraries thereof can beobtained by systematically altering the structure of a first testcompound. Taking a small molecule as an example, e.g., a first compoundis selected that has been identified as capable of binding to IL-1 or amolecule in the IL-1 signalling pathway. As one example, a generallibrary of small molecules is screened, e.g., using a method describedherein, to select a first test small molecule. Using methods known inthe art, the structure of that small molecule is identified if necessaryand correlated to a resulting biological activity, e.g., by astructure-activity relationship study. As one of skill in the art willappreciate, there are a variety of standard methods for creating such astructure-activity relationship. Thus, in some instances, the work maybe largely empirical, and in others, the three-dimensional structure ofan endogenous polypeptide or portion thereof can be used as a startingpoint for the rational design of a small molecule compound or compounds.

In some embodiments, test compounds identified as “hits” (e.g., testcompounds that demonstrate the ability to bind to and inhibit signallingof IL-1) in a first screen are selected and optimized by beingsystematically altered, e.g., using rational design, to optimize bindingaffinity, avidity, specificity, or other parameter. Such potentiallyoptimized structures can also be screened using the methods describedherein. Thus, in one embodiment, the invention includes screening afirst library of test compounds using a method described herein,identifying one or more hits in that library, subjecting those hits tosystematic structural alteration to create one or more second generationcompounds structurally related to the hit, and screening the secondgeneration compound. Additional rounds of optimization can be used toidentify a test compound with a desirable therapeutic profile.

Test compounds identified as hits, e.g., compounds that inhibit IL-1signalling, can be considered candidate therapeutic compounds, useful intreating disorders described herein. In addition, a number of compoundsare known in the art that inhibit IL-1 signalling, including thoselisted below. These compounds are also considered therapeutic compounds,and are useful in the methods described herein.

Screening Assays

As noted above, the screening assays can include, but are not limitedto, one or both of a binding assay and a functional assay. Compoundsthat inhibit IL-1 signalling can be initially identified by the abilityto bind to caspase, IL-1, IL-1R, MyD88, TRAF6, TAK1, NIK/MKK, IKK, orNF-kappaB.

Suitable binding assays are known in the art. For example, solublecompound libraries can be screened by affinity chromatography by contactwith an immobilized molecule, e.g., IL-1, MyD88, or the IL-1 receptor,to isolate test compounds that bind to IL-1, MyD88, or the IL-1receptor, followed by identification of the isolated test compound byconventional techniques (e.g., mass spectrometry, NMR, and the like).Immobilized test compounds can be screened by contacting the compoundswith a soluble molecule, e.g., IL-1, MyD88, or IL-1 receptor (e.g., thesoluble portion of the IL-1R); preferably, the soluble molecule isconjugated to a label (e.g., fluorophores, colorimetric enzymes,radioisotopes, luminescent compounds, and the like) that can be detectedto indicate binding to an immobilized compound. Other suitable bindingassays include, but are not limited to, Fluorescence Resonance EnergyTransfer (FRET) assays, surface plasmon resonance (SPR) assays,radioligand binding assays, two-hybrid assays, and competitive bindingassays (e.g., to identify compounds that compete with IL-1 for bindingof the IL-1R, thereby inhibiting IL-1 signalling). Additional bindingassays useful for screening test compounds are known in the art.

Functional assays are also known in the art that detect IL-1 signallingactivity. For example, cytokine production assays can be used, e.g.,IL-1 secretion assays, e.g., using immunohistochemistry, ELISA, orchip-based methods known in the art. As one example, a population ofleukocytes can be contacted with injured or necrotic cells in thepresence and absence of a test compound, and IL-1 secretion can bemeasured. A test compound that reduces IL-1 secretion in the presence ofthe injured or necrotic cells is a candidate inhibitor of IL-1signalling. Alternatively or in addition, the activity of the IL-1signalling pathway can be evaluated more directly using a cellcontaining a reporter gene linked to an IL-1 responsive promoterelement, e.g., the interleukin response element (ILRE) in the IL-6promoter, see, e.g., Shimizu et al., “Involvement of a NF-kappa B-liketranscription factor in the activation of the interleukin-6 gene byinflammatory lymphokines,” Mol. Cell. Biol. 10(2):561-8, 1990).

Pharmaceutical Compositions and Methods of Administration

The therapeutic compounds described herein (i.e., inhibitors of IL-1signalling) can be incorporated into pharmaceutical compositions. Suchcompositions typically include the compound (i.e., as an active agent)and a pharmaceutically acceptable carrier. As used herein,“pharmaceutically acceptable carriers” includes saline, solvents,dispersion media, coatings, antibacterial and antifungal agents,isotonic and absorption delaying agents, and the like, compatible withpharmaceutical administration. Supplementary active compounds can alsobe incorporated into the compositions, e.g., anti-inflammatory compoundssuch as steroids, NSAIDS, cytokine neutralizing therapeutics such asanti-TNF therapeutics, and/or immunosuppressive agents such ascyclosporin or rapamycin.

Pharmaceutical compositions are typically formulated to be compatiblewith its intended route of administration. Examples of routes ofadministration include parenteral, e.g., intravenous, intradermal,subcutaneous, oral (e.g., inhalation), transdermal (topical),transmucosal, and rectal administration. Solutions or suspensions usedfor parenteral, intradermal, or subcutaneous application can include thefollowing components: a sterile diluent such as water for injection,saline solution, fixed oils, polyethylene glycols, glycerine, propyleneglycol or other synthetic solvents; antibacterial agents such as benzylalcohol or methyl parabens; antioxidants such as ascorbic acid or sodiumbisulfate; chelating agents such as ethylenediaminetetraacetic acid;buffers such as acetates, citrates or phosphates and agents for theadjustment of tonicity such as sodium chloride or dextrose. pH can beadjusted with acids or bases, such as hydrochloric acid or sodiumhydroxide.

Oral compositions generally include an inert diluent or an ediblecarrier. For the purpose of oral therapeutic administration, the activecompound can be incorporated with excipients and used in the form oftablets, troches, or capsules, e.g., gelatin capsules. Oral compositionscan also be prepared using a fluid carrier for use as a mouthwash.Pharmaceutically compatible binding agents, and/or adjuvant materialscan be included as part of the composition. The tablets, pills,capsules, troches and the like can contain any of the followingingredients, or compounds of a similar nature: a binder such asmicrocrystalline cellulose, gum tragacanth or gelatin; an excipient suchas starch or lactose, a disintegrating agent such as alginic acid,Primogel, or corn starch; a lubricant such as magnesium stearate orSterotes; a glidant such as colloidal silicon dioxide; a sweeteningagent such as sucrose or saccharin; or a flavoring agent such aspeppermint, methyl salicylate, or orange flavoring.

Systemic administration of a therapeutic compound as described hereincan also be by transmucosal or transdermal means. For transmucosal ortransdermal administration, penetrants appropriate to the barrier to bepermeated are used in the formulation. Such penetrants are generallyknown in the art, and include, for example, for transmucosaladministration, detergents, bile salts, and fusidic acid derivatives.Transmucosal administration can be accomplished through the use of nasalsprays or suppositories. For transdermal administration, the activecompounds are formulated into ointments, salves, gels, or creams asgenerally known in the art.

For administration by inhalation, the compounds are typically deliveredin the form of an aerosol spray from pressured container or dispenserwhich contains a suitable propellant, e.g., a gas such as carbondioxide, or a nebulizer. Such methods include those described in U.S.Pat. No. 6,468,798.

The therapeutic compounds can also be prepared in the form ofsuppositories (e.g., with conventional suppository bases such as cocoabutter and other glycerides) or retention enemas for rectal delivery.

Therapeutic compounds comprising nucleic acids can be administered byany method suitable for administration of nucleic acid agents, such as aDNA vaccine. These methods include gene guns, bio injectors, and skinpatches as well as needle-free methods such as the micro-particle DNAvaccine technology disclosed in U.S. Pat. No. 6,194,389, and themammalian transdermal needle-free vaccination with powder-form vaccineas disclosed in U.S. Pat. No. 6,168,587. Additionally, intranasaldelivery is possible, as described in, inter alia, Hamajima et al.,“Intranasal administration of HIV-DNA vaccine formulated with a polymer,carboxymethylcellulose, augments mucosal antibody production andcell-mediated immune response,” Clin. Immunol. Immunopathol.,88(2):205-10, 1998). Liposomes (e.g., as described in U.S. Pat. No.6,472,375) and microencapsulation can also be used. Biodegradabletargetable microparticle delivery systems can also be used (e.g., asdescribed in U.S. Pat. No. 6,471,996).

In one embodiment, the therapeutic compounds are prepared with carriersthat will protect the therapeutic compounds against rapid eliminationfrom the body, such as a controlled release formulation, includingimplants and microencapsulated delivery systems. Biodegradable,biocompatible polymers can be used, such as ethylene vinyl acetate,polyanhydrides, polyglycolic acid, collagen, polyorthoesters, andpolylactic acid. Such formulations can be prepared using standardtechniques, or obtained commercially, e.g., from Alza Corporation andNova Pharmaceuticals, Inc. Liposomal suspensions (including liposomestargeted to selected cells with monoclonal antibodies to cellularantigens) can also be used as pharmaceutically acceptable carriers.These can be prepared according to methods known to those skilled in theart, for example, as described in U.S. Pat. No. 4,522,811.

Dosage, toxicity and therapeutic efficacy of the therapeutic compoundscan be determined by standard pharmaceutical procedures in cell culturesor experimental animals, e.g., for determining the LD50 (the dose lethalto 50% of the population) and the ED50 (the dose therapeuticallyeffective in 50% of the population). The dose ratio between toxic andtherapeutic effects is the therapeutic index and it can be expressed asthe ratio LD50/ED50. Compounds which exhibit high therapeutic indicesare preferred. While compounds that exhibit toxic side effects may beused, care should be taken to design a delivery system that targets suchcompounds to the site of affected tissue in order to minimize potentialdamage to uninfected cells and, thereby, reduce side effects.

The data obtained from cell culture assays and animal studies can beused in formulating a range of dosage for use in humans. The dosage ofsuch compounds lies preferably within a range of circulatingconcentrations that include the ED50 with little or no toxicity. Thedosage may vary within this range depending upon the dosage formemployed and the route of administration utilized. For any compound usedin the method of the invention, the therapeutically effective dose canbe estimated initially from cell culture assays. A dose may beformulated in animal models to achieve a circulating plasmaconcentration range that includes the IC50 (i.e., the concentration ofthe test compound which achieves a half-maximal inhibition of symptoms)as determined in cell culture. Such information can be used to moreaccurately determine useful doses in humans. Levels in plasma may bemeasured, for example, by high performance liquid chromatography.

Exemplary doses are as follows. For example, IL-1 R-FP when administeredsubcutaneously will generally be effective at a dosage level of between10 mg and 250 mg (mean dose of 50 mg); when given intrathecally doses ofbetween 0.5 mg and 25 mg (mean dose of 10 mg) will generally be used.

Monoclonal antibodies will generally be used at somewhat higher dosages,usually 0.5-25 mg/kg when administered peripherally, and 0.1-1.0 mg/kgwhen given intrathecally.

IL-1 RA and IL-1 R type II dosages will be similar and will approximate0.02 to 3.0 mg/kg when given daily by subcutaneous bolus injection, and0.01 to 0.5 mg/kg when administered intrathecally.

A therapeutically effective amount of a therapeutic compound (i.e., aneffective dosage) depends on the therapeutic compounds selected. Thecompositions can be administered one from one or more times per day toone or more times per week; including once every other day. The skilledartisan will appreciate that certain factors may influence the dosageand timing required to effectively treat a subject, including but notlimited to the severity of the disease or disorder, previous treatments,the general health and/or age of the subject, and other diseasespresent. Moreover, treatment of a subject with a therapeuticallyeffective amount of the therapeutic compounds described herein caninclude a single treatment or a series of treatments.

The pharmaceutical compositions can be included in a container, pack, ordispenser together with instructions for administration.

Examples

The invention is further described in the following examples, which donot limit the scope of the invention described in the claims.

Methods

Animals and Cell Lines

C57BL/6, IL-1R−/−, and IL-18R−/− mice (8-12 weeks old) were purchasedfrom The Jackson Laboratory. B6x129 F1 (B6129) mice (8-12 weeks old)were purchased from Taconic. MyD88−/− (Adachi et al., “Targeteddisruption of the MyD88 gene results in loss of IL-1- and IL-18-mediatedfunction,” Immunity, 9:143-150, 1998), TIR Domain-Containing AdaptorProtein (TIRAP)/Mal−/− (Yamamoto et al.,. “Essential role for TIRAP inactivation of the signalling cascade shared by TLR2 and TLR4,” Nature,420:324-329, 2002), TRIF−/− (Yamamoto et al, “Role of adaptor TRIF inthe MyD88-independent toll-like receptor signaling pathway,” Science,301:640-643, 2003), TRAM−/− (Yamamoto et al, “TRAM is specificallyinvolved in the Toll-like receptor 4-mediated MyD88-independentsignaling pathway,” Nat. Immunol., 4:1144-1150, 2003), TLR1−/− (Takeuchiet al., “Cutting edge: role of Toll-like receptor 1 in mediating immuneresponse to microbial lipoproteins,” J. Immunol., 169:10-14, 2002),TLR2−/− (Takeuchi et al., “Differential roles of TLR2 and TLR4 inrecognition of gram-negative and gram-positive bacterial cell wallcomponents,” Immunity, 11:443-451, 1999), TLR3−/−, TLR4−/− (Hoshino,1999), TLR6−/− (Takeuchi et al., “Discrimination of bacteriallipoproteins by Toll-like receptor 6,” Int. Immunol., 13:933-940, 2001),TLR7−/− (Hemmi et al.,. Small anti-viral compounds activate immune cellsvia the TLR7 MyD88-dependent signaling pathway. Nat. Immunol.,3:196-200, 2002), and TLR9−/− (Hemmi et al., “A Toll-like receptorrecognizes bacterial DNA,” Nature, 408:740-745, 2000) mice weregenerated at the Department of Host Defense (Osaka University, Osaka,Japan). TLR11−/− (Zhang et al., “A toll-like receptor that preventsinfection by uropathogenic bacteria,” Science, 303:1522-1526, 2004) micewere kindly provided by Dr. Sanker Ghosh (Yale University). TLR2/4−/−mice were generated by crossing TLR2−/− with TLR4−/− mice. All animalstudies have been approved by the Institute Animal Care and UseCommittee, and all mice were kept in the University of MassachusettsMedical School animal facilities. EL4 and B 16 cells were maintained inhybridoma culture media (HCM) consisting of RPMI medium 1640 plus 10%FBS, 2 mM L-glutamine, 10 mM Hepes, penicillin/streptomycin, and 50 μM2-mercaptoethanol. Hmgb1+/+ and Hmgb1−/− fibroblast cells were providedby Dr. Marco Bianchi (San Raffaele Scientific Institute, Italy) andmaintained in DMEM plus 10% FBS.

Cell Injury Induction

EL4 cells were harvested by centrifugation, washed 3 times with PBS, andresuspended in PBS at a density of 13-20×10⁷ cells/ml before subjectedto heat shock at 45° C. for 10 minutes. Heat-shocked EL4 cells wereincubated at 37° C. for 5 hours before challenged into animals. B16,Hmgb1+/+, and Hmgb1−/− cells cultured on 15-cm dishes were rinsed oncewith 10 ml of PBS and covered with 6 ml of PBS. The cells were thenexposed to a UV source for 10 minutes, trypsinized, washed 3 times withPBS, and resuspended in PBS at a density of 13-20×10⁷ cells/ml.UV-irradiated B16, Hmgb1+/+, and Hmgb1−/− cells were incubated at 37° C.for 5 hours before challenged into animals. Before challenged intoanimals, heat-shocked EL4 and UV-irradiated B16, Hmgb1+/+, and Hmgb1−/−cells were confirmed to be necrotic (Annexin V+, 7−AAD+). Mouse liverhomogenate was prepared by first using a motor-driven potterhomogenizer, and the homogenate was subject to five freeze-thaw cycles.

Acetaminophen (AAP) Treatment

Before experimental use, mice were fasted for 16-18 hours and were theninjected i.p. with 300 mg/kg AAP or 20 ml/kg PBS. Eighteen hours afterAAP administration, blood was drawn for serum collection and ALT assay(SYNCHRON LX Systems, Beckman Coulter), and mice were euthanized toobtain liver tissues for MPO activity assay.

Myeloperoxidase (MPO) Activity Assay

Mouse liver tissues were homogenized in MPO buffer (0.5% hexadecyltrimethyl ammonium bromide, 10 mM EDTA, 50 mM Na₂HPO₄, pH 5.4) using aPolytron homogenizer (Brinkmann). Liver homogenates were then subject tothree freeze-thaw cycles and cleared by centrifugation to obtain theliver lysate. MPO reaction was carried out by first mixing 25 μl liverlysate with 25 μl assay buffer (1.67 mg/ml O-dianisidine, 50 mM Na₂HPO₄,pH 5.4) in a 96-well plate, and after adding 200 μl development solution(0.01% H₂O₂, 50 mM Na₂HPO₄, pH 5.4), absorbance at 450 nm was measuredevery 15 sec using the kinetic mode in a microplate reader.

Generation of Bone Marrow Chimeras

C57BL/6 and IL-1R−/− mice were lethally irradiated using 1100 rad. Bonemarrow was prepared from the femurs and tibias of B6.SJL-Ptprca/BoAiTac(B6.SJL, CD45.1) or IL-1R−/− donor mice and depleted of T cells using amonoclonal antibody against Thy 1, M5/149 (ATCC) and complement(PEL-Freeze Biologicals). The irradiated mice were reconstitutedintravenously (i.v.) with 2.5×10⁶ of different T cell-depleted bonemarrow cells as indicated. The mice were then housed for 3-4 months toallow for the turnover and reconstitution of bone marrow-derived cells.The reconstitution of the chimeras was confirmed by staining bloodleukocytes with anti-CD45.1 and anti-CD45.2 antibodies (BD Biosciences)and flow cytometric analysis.

Injured Cell-Induced Inflammation In Vivo

Mice were injected i.p. with 2-3×10⁷ necrotic EL4, B6, Hmgb1+/+, orHmgb1−/− cells in 0.15 ml PBS, or 36 mg of mouse liver homogenate in0.15 ml PBS. Equal volumes of PBS was injected into 2 mice and served asnegative controls. At 16 hours after challenge, animals were euthanizedby CO2 exposure, and their peritoneal cavities were washed with 7 ml ofHCM containing 3 mM EDTA and 10 U/ml heparin. Total numbers ofperitoneal exudate cells (PEC) were counted by a hematocytometer, andlavage fluids were centrifuged at 450×g for 10 minutes. Cells wereresuspended in HCM and subjected to staining and flow cytometricanalysis. Neutrophil and monocyte numbers in the PEC were determined bymultiplying the total cell numbers with the percentage of Ly-6G+,7/4+cells and Ly-6G−, 7/4+ cells, respectively.

Flow Cytometric Analysis

PEC (1×10⁶) were incubated with mAb 2.4 G2 for 30 min to blockFcγRIIB/III receptors, and stained with mAbs Ly-6G-FITC (BD Biosciences)and 7/4-biotin (Serotec) for 30 minutes at 4° C. The cells were furtherincubated with strepavidin-APC. Following staining, cells were washedwith PBS, fixed in PBS containing 2% paraformaldehyde, and analyzed on aFACSCalibur (BD Biosciences) FACS analyzer. Data were acquired byCELLQUEST software and analyzed by FLOWJO software (Tree Star, Inc.).

Statistical Analyses

Statistical analysis in each independent experiment was performed withan unpaired, two-tailed Student's t-test. In FIGS. 2A-2J, data frommultiple repeats were combined and analyzed using a linear mixed model(Fitzmaurice, 2004) with experiment as the random effect. Data arereported as mean±standard errors. P<0.05 was considered statisticallysignificant.

Example 1 The Role of TIR Adaptor Proteins in Sterile Inflammation

In mammals TLR receptors play a major role in sensing the presence ofmicrobes. When these receptors recognize microbial molecules theystimulate inflammation. It has been supposed that similar proteins andpathways are also activated during various types of sterileinflammation. However, it is presently unknown how important TLRs are inthe inflammatory response provoked by dying cells.

TLRs signal through intracellular Toll/IL-1 receptor (TIR) adaptormolecules. The various TLRs utilize either one or several different TIRdomain proteins: MyD88, TIRAP/Mal, TRIF, and TRAM. As a first step toexamine whether TLRs are involved in mediating inflammation triggered bycell injury, the ability of mice deficient in each of the 4 TIR adaptorsto respond to dead cells was analyzed. PBS or heat-shocked necrotic EL4cells were injected intraperitoneally into wild type, MyD88^(−/−),Mal^(−/−), TRIF^(−/−), or TRAM^(−/−) mice. After 16 hours, theperitoneal cavities of the mice were lavaged and the cellular contentsin the harvested fluid were quantified. The peritoneal cells (PEC) werestained with antibodies specific for Ly-6G and 7/4 and analyzed by flowcytometry. This allowed us to determine the number of neutrophils(Ly-6G⁺7/4⁺) and monocytes (Ly-6G⁻7/4⁺) recruited to the inflamed site.Neutrophil numbers in PEC were determined by multiplying the total cellnumbers with the percentage of Ly-6G⁺, 7/4⁺ cells (n=3). The results,shown in FIG. 1A, indicated that mice injected with PBS had very fewinflammatory cells present in the peritoneum, as expected. In contrast,necrotic EL4 cells induced strong infiltration of neutrophils andmonocytes into the peritoneal cavity of wild type mice (FIG. 1A).Remarkably, neutrophil recruitment was dramatically impaired inMyD88^(−/−) mice (FIG. 1B). Neutrophil recruitment in TRAM^(−/−) micewas also significantly reduced, (FIG. 1C). There was no reduction ininflammation in mice deficient for TIRAP/Mal (FIG. 1D) and TRIF (FIG.1D).

The strongly impaired neutrophil recruitment in MyD88^(−/−) miceindicates that MyD88-mediated signaling plays a major role in theinflammatory response to injured cells. To exclude the possibility thatMyD88 might be inherently unable to generate inflammation to anystimuli, mice were challenged with zymosan (yeast cell walls), and foundthat MyD88^(−/−) mice generated a normal inflammatory response comparedwith the wild type mice (FIG. 1F). Therefore, the recruitment ofinflammatory leukocytes to the site of inflammation is not inherentlyimpaired in MyD88^(−/−) mice, and MyD88 is specifically required duringthe sterile inflammation triggered by injured cells.

Example 2 The Role of TLRs in Sterile Inflammation to Injured Cells

The requirement of MyD88 and to a lesser extent TRAM during injuredcell-induced inflammation suggested that TLRs could play a role inmediating this response.

To investigate the role of TLRs in the sterile inflammatory response todying cells, the response in mice that were genetically deficient invarious TLRs was examined.

Necrotic EL4 cells were injected into the peritoneum of TLR-deficientmice and the acute inflammatory response was evaluated by quantifyingthe influx of neutrophils. The inflammation was modestly reduced inTLR2^(−/−) and TLR4^(−/−) mice, although this trend was notstatistically significant in mice lacking only one or the other receptor(FIGS. 2B and 2D). In contrast, statistical analysis of the results ofthree independent experiments showed a significant reduction inneutrophil infiltration in TLR2/4 double-deficient animals compared withthe wild type animals (FIG. 2I). These results indicate that TLR2 andTLR4 play some role in sensing/transducing inflammatory signals frominjured cells. However, this role is not a dominant one since there isstill a strong inflammatory response in the TLR2/4 double-deficientmice. The participation of TLR4 in the sterile inflammatory response isconsistent with the findings that a TRAM-mediated pathway plays a minorrole in the response to injured cells, since TLR4 signals through theTRAM TIR adaptor. In contrast, inflammation was not reduced in any ofthe other TLR-deficient mice (TLR1, 3, 6, 7, 9 and 11) (FIGS. 2A, C, E,F, G, and H). Therefore, there is no evidence that TLRs other than TLR2and 4 are involved in the sterile inflammatory response. However, it isnot known whether the two TLRs not tested (TLR5 and 8, for which mutantmice were not available) might be involved or whether multiple TLRsmight be participating in a functionally redundant fashion.

Some of the TLR and adaptor mutant mice (TLR1, TLR3, TLR6, TLR7, TLR11,Mal, TRAM, and TRIF) were not fully backcrossed to the B6 background.Therefore, whether polymorphic 129 genes (the original strain of originof the mutants) influence the inflammatory response in this system wasevaluated. Conceivably polymorphic genes could affect the responsivenessof the host, or genetic differences between the host and injured cellmight stimulate an alloreaction that might contribute to theinflammation. Since the inflammatory assay is of short duration and EL4cells (of C57BL/6 origin) share the same MHC genes as 129 mice, itseemed highly unlikely that an alloreaction would contribute to theacute inflammatory response. Nevertheless, to rule out this possibility,necrotic EL4 cell-induced inflammation was compared in B6 and B6x129 F1(B6129) mice. No significant differences in the inflammatory responsebetween these two strains was found (FIG. 2J), indicating that after 129mice are crossed to B6 background for one generation, the F1 hybrid miceand B6 mice exhibit similar inflammatory responses to necrotic EL4cells. Since all mutant mice that were used in this study werebackcrossed to B6 background for at least 3 generations, it is highlyunlikely that genetic differences between B6129 hybrid mice and B6 miceconfound the interpretation of data with the mutant animals not fullybackcrossed onto the B6 background.

Example 3 Role of IL-1 and IL-18 Receptors in Sterile Inflammation toInjured Cells

The results from the experiments described thus far demonstrate that theinflammatory response to injured cells is much more dramaticallyaffected by the loss of MyD88 than by the absence of any of the TLRs.These findings raised the possibility that a MyD88-dependent receptorother than TLRs might be involved in this process. There are in fact twoother receptors that are known to utilize MyD88: the IL-1 receptor(IL-1R) and IL-18 receptor (IL-18R). Therefore, the ability of IL-1R andIL-18R-deficient mice to respond to injured cells was examined.

Necrotic EL4 cells were injected into the peritoneal cavity of IL-1R orIL-18R-deficient mice and the acute inflammatory response was evaluated.There was a reduction of 86.6% in the neutrophil response in IL-1Rmutant mice at 16 hrs (FIG. 3A). In contrast the inflammatory responsewas not reduced in IL-18R-deficient mice (FIG. 3B). These resultsdemonstrated that the IL-1R played an important role in neutrophilrecruitment during the acute inflammatory response to injured cells.Since IL-1R signaling operates through MyD88, these results identify theIL-1R-MyD88 pathway as a major component of the neutrophilic sterileinflammatory response to injured cells. This almost certainly accountsfor the much more dramatic phenotype observed in MyD88-deficient mice ascompared to TLR null mice.

Example 4 IL-1R Functions on Non-Hematopoietic Cells in the InflammatoryResponse to Injured Cells

The IL-1R is broadly expressed and many cell types can produce IL-1. Tofurther understand where the IL-1R-MyD88 pathway was needed to mount theinflammatory response, mice chimeric for the IL-1R were analyzed. Wildtype mice that were reconstituted with IL-1R-deficient bone marrow(IL-1R^(−/−)→wt) showed no significant reduction in inflammatoryresponses to necrotic EL4 cells (FIG. 4A); therefore, the IL-1R is notrequired on leukocytes for this response. In contrast, IL-1R-deficientmice reconstituted with wild type bone marrow (wt→IL-1R^(−/−)) hadmarkedly reduced inflammatory responses to injured EL4 cells (FIG. 4B).These results demonstrated that the IL-1R was required on radioresistant(non-bone marrow-derived), but not radiosensitive (bone marrow-derived)host cells, to respond to IL-1. In a separate set of chimeric mice whosebone marrow-derived but not other cells lacked MyD88, necrotic EL4cell-stimulated neutrophil infiltration was at a similar level as in thecontrol wild type chimeras (data not shown), indicating that MyD88expression in bone marrow-derived cells is not essential for generatingan inflammatory response to injured cells.

Example 5 The Inflammatory Response to Several Kinds of Injured CellsRequires MyD88 and IL-1R

To determine whether the IL-1R and MyD88-signalling pathways weregenerally required for the inflammatory response to injured cells, theirrole in the sterile inflammatory response to additional types of deadcells was tested. B 16 melanoma cells (of C57BL/6 origin) were subjectto UV irradiation injury, and the resulting necrotic B16 cells wereinjected into the peritoneal cavity of MyD88 or IL-1R-deficient mice.Subsequently, the acute inflammatory response was evaluated at 16 hoursafter challenge. Similar to necrotic EL4 cells, UV-irradiated B16 cellsalso induced strong influx of neutrophils and monocytes to theperitoneal cavity (FIG. 5B). In MyD88^(−/−) mice, neutrophil recruitmentwas significantly reduced (FIG. 5B). A similar reduction in inflammatoryleukocyte infiltration was also found in IL-1^(−/−) mice; necroticB16-induced neutrophil infiltration was strongly suppressed (FIG. 5B).

Both EL4 and B16 are transformed cell lines cultured in the laboratoryfor a long period of time, so the possibility of the presence ofmicrobial components (e.g. viral genes/viral proteins) in these cellscould not be ruled out. So in addition to the inflammation induced bydying cultured cells, the response triggered by necrotic primary cellswas also examined. C57BL/6 mouse liver was homogenized mechanically andsubjected to freeze-thaw cycles, and the resulting liver homogenate wasinjected into the peritoneal cavity of wild type, MyD88^(−/−), orIL-1R^(−/−) mice. Homogenized liver tissue induced as strong peritonealinflammation as necrotic cultured cells (FIG. 6B); furthermore, theneutrophil influx was reduced in MyD88^(−/−) mice (FIG. 6B) andIL-1R^(−/−) mice (FIG. 6B). These experiments with cultured cells andprimary tissues demonstrated that MyD88 and IL-1R play importantregulatory roles in cell/tissue injury-induced inflammatory responses.

Example 6 Role of the IL-1R-MyD88 Pathway in the Monocyte Response inSterile Inflammation

Monocytes are also recruited to sites of cell injury. When the number ofmonocytes (Ly-6G⁻7-4⁺) recruited into the peritoneal cavity ofMyD88-deficient mice injected with necrotic EL4, B16 or liver cells wasanalyzed, there was a modest reduction in recruitment of monocytes (FIG.7A). Interestingly, the reduction in magnitude of this response was muchless than was observed for neutrophils. A similar modest reduction inmonocytes was observed when B16 and liver cells were injected intoIL-1R-deficient mice (FIG. 7B). Surprisingly, for reasons that aren'tclear the monocyte response to EL4 was actually significantly increasedin the IL-1R null mice. These results indicate that during the acuteinflammatory response triggered by injured cells, neutrophils andmonocytes can be recruited to the inflamed site through somewhatdifferent mechanisms. The recruitment of neutrophils is more dependenton IL-1 than for that of monocytes.

Example 7 Acetaminophen-Induced Liver Damage and Inflammation RequiresIL-1R-Mediated Signaling

All of the experiments described thus far have involved injecting deadcells into the peritoneum of mice. This example tested the generality ofthese findings to a situation where cell injury and death occurred insitu. For this purpose, an acetaminophen (AAP)-induced hepatotoxicitymodel was used where AAP-induced liver necrosis results in aninflammatory response (Jaeschke, “Mechanisms of Liver Injury. II.Mechanisms of neutrophil-induced liver cell injury during hepaticischemia-reperfusion and other acute inflammatory conditions,” Am. J.Physiol. Gastrointest. Liver Physiol., 290(6):G1083-8, 2006; Jaeschkeand Bajt, “Intracellular signaling mechanisms of acetaminophen-inducedliver cell death,” Toxicol. Sci., 89:31-41, 2006; Jaeschke, “Role ofinflammation in the mechanism of acetaminophen-induced hepatotoxicity,”Expert Opin. Drug Metab. Toxicol. 1(3):389-97, 2005).

To examine the role of IL-1R in AAP-induced liver injury andinflammation, an overdose of AAP (300 mg/kg) was administeredintraperitoneally into mice, and serum alanine aminotransferase (ALT)activity and liver myeloperoxidase (MPO) activity were measured at 18hours after challenge. ALT is a hepatocyte-specific enzyme and isreleased into blood during liver damage and hepatocyte necrosis; MPO isa neutrophil-specific enzyme and is used as a maker for neutrophilrecruitment. The administration of AAP caused liver damage as indicatedby the high serum ALT levels (FIG. 8A), and liver injury induced therecruitment of neutrophils to the liver tissue, which is thought tocompound the tissue damage (FIG. 8B). Remarkably, both serum ALT andliver MPO activities were significantly reduced in IL-1R^(−/−) mice,indicating that IL-1 is an important mediator for AAP-induced liverinjury and neutrophilic inflammation.

Example 8 Role of HMGB1 in Sterile Inflammation

Since dead cells incite an inflammatory response, they must release orexpose a proinflammatory molecule(s). To fully understand the pathwaysthat generate the sterile inflammatory response, it will be important tounderstand this proinflammatory signal(s). It was reported thatHmgb1^(−/−) necrotic cells had a reduced ability to promote inflammatorycytokine production by monocytes ex vivo, and antibodies to HMGB1reduced inflammation to liver necrosis in vivo (Scaffidi, “Release ofchromatin protein HMGB1 by necrotic cells triggers inflammation,”Nature, 418:191-195, 2002), thus HMGB1 has been suggested to be a majorproinflammatory factor released from damaged or necrotic cells. However,it is unknown whether HMGB1 is the only proinflammatory factor releasedfrom dead cells.

To investigate this issue, necrotic Hmgb1^(−/−) fibroblasts wereinjected into the peritoneum of B6129 mice. As shown in FIG. 9A, micealso developed a strong acute inflammatory response to necroticHmgb1^(−/−) fibroblasts, indicating that HMGB1 is not the onlyproinflammatory factor released from necrotic cells. When theinflammatory responses stimulated by necrotic Hmgb1^(−/−) andHmgb1^(+/+) fibroblasts were compared, there was no significantdifference in the influx of either neutrophils or monocytes (FIG. 9A andB). Similar results were obtained when the HMGB1-positive and negativecells were injected subcutaneously and the neutrophil influx to the skinwas determined by measuring the level of MPO at the injection site (datanot shown). Therefore, HMGB1 is not the major proinflammatory factorthat drives the inflammatory response to necrotic cells, at least in thecase of fibroblasts.

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Other Embodiments

It is to be understood that while the invention has been described inconjunction with the detailed description thereof, the foregoingdescription is intended to illustrate and not limit the scope of theinvention, which is defined by the scope of the appended claims. Otheraspects, advantages, and modifications are within the scope of thefollowing claims.

1. A method of treating, preventing, or delaying development orprogression of a condition associated with sterile inflammation causedby necrosis in a subject, the method comprising administering to thesubject a therapeutically effective amount of a compound that inhibitsIL-1 signalling, wherein the compound is an antisense oligonucleotide ora small interfering RNA (siRNA) that inhibits expression of MyeloidDifferentiation Primary Response Gene 88 (MyD88).
 2. The method of claim1, further comprising: detecting the presence of necrotic cells ortissues in a subject who has, or is at risk of having, a conditionassociated with sterile inflammation; and selecting the subject ifnecrotic cells are present.
 3. The method of claim 1, wherein thecondition associated with sterile inflammation caused by necrosis issterile inflammation associated with pancreatitis.
 4. The method ofclaim 1, wherein the condition associated with sterile inflammationcaused by necrosis is sterile inflammation associated with ischemicinjury.
 5. The method of claim 4, wherein the ischemic injury is aninjury to cardiac tissue, uterine tissue, renal tissue, hepatic tissue,neural tissue, muscle tissue, dermal tissue, or other organ.
 6. Themethod of claim 4, wherein the ischemic injury is caused by a surgicalintervention.
 7. The method of claim 1, wherein the condition associatedwith sterile inflammation caused by necrosis is caused by organtransplantation procedure.
 8. The method of claim 7, wherein thenecrosis is in the transplanted organ.
 9. The method of claim 1, whereinthe administration is local administration to the necrotic cells or atissue or organ comprising the necrotic cells.
 10. The method of claim1, wherein the administration is local.